This study was performed to elucidate the distribution, concentration trend and possible source of polycyclic aromatic hydrocarbons (PAHs) in surface water and bed sediments of the Hungarian upper section of the Danube River and the Moson Danube branch. A total of 217 samples (water and sediments) were collected from four different sampling sites in the period of 2001-2010 and analysed for the 16 priority US Environmental Protection Agency PAHs. Concentrations of total 16 PAHs (ΣPAHs) in water samples ranged from 25 to 1,208 ng/L, which were predominated by two- and three-ring PAHs. The ΣPAH concentrations in sediments ranged from 8.3 to 1,202.5 ng/g dry weight. Four-ring PAHs including fluoranthene and pyrene were the dominant species in sediment samples. A selected number of concentration ratios of specific PAH compounds were calculated to evaluate the possible sources of PAH contamination. The ratios reflected a pattern of pyrogenic input as a major source of PAHs. The levels of PAHs determined were compared with other sections of the Danube and other regions of the world. © 2012 Springer Science+Business Media Dordrecht.