The preservation of endangered domestic animal breeds is a specific area of sustainable livestock farming. In the southern part of the Carpathians, a variant of Zaupel-type (Racka) sheep, which was small in size and resistant to the cold mountain weather, developed at the beginning of the 19th century. In order to preserve this historical variant, it was introduced in Hungary in the early 1990s. The aim of this work is to study the pedigree of the repatriated population of the Gyimes Racka to understand its population structure and to support its future breeding work. The pedigree data (2005-2020) show that the number of founding individuals (Nf) was 3,838, within which the number of maternal lineages was 2,255. The effective number of founders (fe) and the effective number of significant ancestors (fa) in the total pedigree population were higher than in the reference population (n=2,591; 67 and 56 vs. 20 and 14, respectively). The pedigree traced back to a maximum of 2.51 generations with an average of 1.34 complete generations and 1.78 equivalent complete generations on average (in the reference population: 6.05, 2.73 and 3.82, respectively). Of the 16,947 animals registered in the herd book (with an average normalised COI of 1.43 % obtained by log transformation), 3,828 were inbred (6.30 %). As regards the maternal generations, it can be observed that the inbred stage increases steadily and significantly from the beginning to the present eighth generation (from 0.00 % to 9.54 %). The average generation interval between breeding animals was 3.29 years (obtained by log transformation). The sire-progeny paths had shorter (2.92-3.02) and the dam-progeny paths had longer (3.62-3.70) intervals. The Gyimes Racka population is already showing signs of genetic narrowing during its short conservation period, which calls for attention to stop undesirable trends.

The population structure of the endangered Cikta sheep breed was evaluated by means of nine microsatellite polymorphisms. Seventy-two individuals from three flocks were sampled to determine genetic indices in the Hungarian population. Overall, average observed and effective allele numbers were 5.63 and 3.76, respectively. Discriminant analysis based on genotype frequencies revealed moderate genetic diversity among Cikta flocks, since only three loci (OarCP49, CSSM47 and OarHH41) contributed significantly (P<0.05) to differences between subpopulations. Low squared Mahalanobis distances from group centroids also confirmed that the breed is almost equally represented by the three flocks. Moderate level of diversity between flocks was attributed to the long-term effects of a population bottleneck dating back to the 1970s. Negative average FIS value (-0.18) indicated heterozygote excess. Chi-squared tests identified significant (P<0.05) deviation from HWE in the case of BM8125, CSSM47, and MAF214 markers. Continuous microsatellite information is required for the preservation of rare alleles and diversity in Cikta sheep.

The authors studied the present status of Hungarian indigenous sheep breeds based on the genetic background of scrapie resistance. The aim of this investigation was to estimate the relative frequency of prion haplotypes, genotypes and risk categories, as well as to reveal the efficiency of the scrapie eradication programme achieved over the last decade. A novel approach in the characterisation of prion by using its genic variation was also implemented. The authors established that the proportion of deleterious sites (%) can be a useful indicator of the eradication programme. Based on a large sample size, it was confirmed that the scrapie resistance of the Cikta breed is low, and the classification of this breed according to risk category has not improved. However, the frequent genotype ARQ and risk category 3 can also be considered characteristic of the breed. The careful use of these genotypes is permitted and will contribute to the maintenance of breed diversity. The response of prion genic variation to selection for scrapie resistance in the other breeds (Tsigai, Milking Tsigai, White Racka, Black Racka and Gyimes Racka) was definitely successful.

The authors study the current status of Hungarian Cikta Sheep based on genetic background of scrapie resistance. The aim of this investigation was to estimate the relative frequency of prion haplotypes, -genotypes, and risk categories as well as to reveal the efficiency of scrapie eradication program achieved over the last decade. The authors confirmed based on larger sample size the previous knowledge, that the resistance against scrapie of Cikta breed is considered as low, and the classification of this breed according to risk category has not been improved. However, the frequent genotype ARQ and risk category 3 can also be considered for breed specificity. The careful use of these genotypes is permitted and will contribute to the maintenance of breed diversity according to other aspects.